Shopify said that the brand has violated its terms, one of which is to refrain from selling "offensive" products.
The ecommerce giant continues to sell antisemitic merchandise and Holocaust-denial content through other users, however.
A former Yeezy employee alleges West sent her "hail Hitler" texts and made degrading comments before firing her, adding to the rapper's history of controversial antisemitic behavior.
Isla Fisher urged her followers to cut ties with Kanye West after the rapper promoted his new swastika-laden merchandise, drawing widespread condemnation.
Kanye West was dropped by his talent agency and one of his top staffers quit after he made a number of antisemitic and other offensive remarks.
Kanye West is being sued by a former employee who claims she was psychologically tormented for being Jewish by the artist.